NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209199_1000811

Scaffold Ga0209199_1000811


Overview

Basic Information
Taxon OID3300025809 Open in IMG/M
Scaffold IDGa0209199_1000811 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41127
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026885Metagenome / Metatranscriptome196N
F028498Metagenome / Metatranscriptome191N
F103078Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209199_100081111F103078N/AMEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTNRGDIRFAGELATESKIFGESVEDAEDQIDFWMNHPMVEDINGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMSDDDVTLELVDIEGGLLLREPNTSRFIETFGSLNKSSVAKKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEVEDDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHAYEEENGIELSE
Ga0209199_10008117F026885N/AMIEVGKYSIVSLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDATTYAKRACTVDIVDGRAKLPMGFIRLLGARMSDSNGNCFDQPYLDLAFLTDCGCDNVAGNNGGFNNSFEIQEGYIVFHVPSDLETDKMRIAYISRTVDEDGLMLMSERHERGIEAYLCYQFTVSFFENYPVNIRQEYQRTWKNQKQYLKGMSQRERFEENKRQIGALLNAWITSDRNDR
Ga0209199_10008118F028498N/AMADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKKNLQQDDCYTLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKVRTRMQLSSRRNHRIHKLAQKKHIHFLYDTTRGYLEIYDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRIPINKISNSQEDSNIQRDVQTK

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