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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025809 Open in IMG/M |
| Scaffold ID | Ga0209199_1000811 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41127 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (22.22%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026885 | Metagenome / Metatranscriptome | 196 | N |
| F028498 | Metagenome / Metatranscriptome | 191 | N |
| F103078 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209199_100081111 | F103078 | N/A | MEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTNRGDIRFAGELATESKIFGESVEDAEDQIDFWMNHPMVEDINGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMSDDDVTLELVDIEGGLLLREPNTSRFIETFGSLNKSSVAKKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEVEDDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHAYEEENGIELSE |
| Ga0209199_10008117 | F026885 | N/A | MIEVGKYSIVSLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDATTYAKRACTVDIVDGRAKLPMGFIRLLGARMSDSNGNCFDQPYLDLAFLTDCGCDNVAGNNGGFNNSFEIQEGYIVFHVPSDLETDKMRIAYISRTVDEDGLMLMSERHERGIEAYLCYQFTVSFFENYPVNIRQEYQRTWKNQKQYLKGMSQRERFEENKRQIGALLNAWITSDRNDR |
| Ga0209199_10008118 | F028498 | N/A | MADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKKNLQQDDCYTLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKVRTRMQLSSRRNHRIHKLAQKKHIHFLYDTTRGYLEIYDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRIPINKISNSQEDSNIQRDVQTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |