Scaffold Ga0256871_1005834

Overview

Basic Information

• Taxon OID: 3300025804
• Scaffold ID: Ga0256871_1005834
• Source Dataset Name: Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_07 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6296
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256871_10058342	F051210	N/A	MTDYASYMKSEKMMDALMNSSVSLDDARIRANEYAKMFSRNENDFGFNQSANLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDINSMGGFEADVTVNGTTYDVTIGRKLIPGTVRVKIDSNIELVDDGQGNFMAKAGVMTAGTLNYLSGRVQFTMASAPTTSIKVIGKEDVTGTPCNTTGASNTHANDKRFVAKMQQLGLQTVPDMLVAEYNIAALGAMKKATGADMASFLFTKLRELYTKMINYKLVSTMEAGYNGNTMIDLDMSTFQPQSQTNFTFTDYRSRVDLFDAYLVNVETALAQKAVKGVTTTAYVAGTKAASQFQKGGIIGKFKRNDKMTYISDLLGWYDGIPVLRSSDIKEDDRDGKSTGTFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYLAPELVQKVNFKIGL