Scaffold Ga0210063_1000002

Overview

Basic Information

• Taxon OID: 3300025798
• Scaffold ID: Ga0210063_1000002
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 270612
• Total Scaffold Genes: 307
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 197 (64.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 37.926434
  • Long. (^o): -122.509186

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F019205	Metagenome / Metatranscriptome	231	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210063_1000002121	F005789	GGAGG	MATAVGLDSSPLNFLRSMRGAIIDARIAYPEVLHVDIKDSAGELWRLTTQDADWSPLDPEQLIGRSVEDADIDGETGELRCKLSDGSLLDVKPAEREAEDDPPYWELITPGGVLLEFGPGVRWQIGSADSRASSRA
Ga0210063_1000002122	F032367	GGTGG	VSRKRDIKQFRQACKEAGLTAGERREASDAFHAEKKSGSVQRDMSYGELLAWLRQWRA
Ga0210063_10000022	F019205	GAG	MFDSKKSFSHKAADAADLVIDFATLGEYGLEPVEQPARSCEGRSRIGSPRSTGAWSAAIARFATQA