NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209200_1079118

Scaffold Ga0209200_1079118


Overview

Basic Information
Taxon OID3300025784 Open in IMG/M
Scaffold IDGa0209200_1079118 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078879Metagenome / Metatranscriptome116N
F103501Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209200_10791181F103501AGGAMIKNIVLEGVVSYDVEYDLWCVDEDFIENIISDFEDKKVLVTITVI
Ga0209200_10791182F078879AGGMTPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTTFFTNLTYDCPYREEFLDWLALATAELAEEMEKL

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