Scaffold Ga0209200_1004020

Overview

Basic Information

• Taxon OID: 3300025784
• Scaffold ID: Ga0209200_1004020
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12281
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034978	Metagenome	173	Y
F075677	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209200_100402018	F075677	GGAGG	MNLNDIITNITLTKVCSIKPDKDSDESKNITLRIKFDGSTLQSVFDKAVSGAVIQWQNGVGRKNFDTFKPNQIIDIQFNAPASRTAIDPETAMIAKLKSMTPEEQKAYMLDMMNKAASPLGRKSFAPDSDPNKKA
Ga0209200_10040205	F034978	GGAGG	MEDIKIRASKEAIEEFKDSILWADIVEELKIWKEGFNGEMQSIVDNAEGSNPSTASVLLHIGDLNGRQKAVDYFLNLPDVFLSVLRNKEKVKEERR