NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209200_1002759

Scaffold Ga0209200_1002759


Overview

Basic Information
Taxon OID3300025784 Open in IMG/M
Scaffold IDGa0209200_1002759 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15779
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037746Metagenome / Metatranscriptome167N
F053881Metagenome / Metatranscriptome140N
F070633Metagenome / Metatranscriptome123N
F074119Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209200_100275912F053881GAGGMRGQTTTARAMSKLLKISRESLGEKERKLYSKLYNHIIQNFEVDEIAADQIAIALINQKCILLPRLLSGEDVDLNQTSESIRKWLSEYRLTPKSREKEKEVTINLSAIIEDIHRERDNPS
Ga0209200_100275913F070633AGGAGVLDVLHSNSDDGFVYSVRQHLPLGPKRCKSDYNLVVVPLSDGIMTSIERETFNIAMDTEGRLILTRKDRKVQLVFDYDKGFMTGVLGGVLYDTFEVPRHEGTDYHG
Ga0209200_100275915F037746GGAGGMPVDIEWAKANDTVGQEFDANYIPGTTDKDLEDARALMEKLLKKYGSRDALEADERDWAKYKKAMYVVASRSKDTMDAANKTREGLIKRKNLLSKFWEENPDVLFGLSEWQRINIRKYTDLGLLIDQEYLWDLLSELGKEDTIKHLANVANYIYNDTGFLGGTREDYDALKRGPVRSIYLRPTCKSHKTISPSCGNGCSKKE
Ga0209200_100275917F074119GAGGMSEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHELAEFFNTVDEALYDDAVTEKEFRAIWEKGRILFQWSFAEKKGEA
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Biomedical Sciences Research Center "Alexander Fleming"
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