Scaffold Ga0209200_1002300

Overview

Basic Information

• Taxon OID: 3300025784
• Scaffold ID: Ga0209200_1002300
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17911
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092957	Metagenome / Metatranscriptome	107	Y
F096520	Metagenome / Metatranscriptome	104	Y
F102391	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209200_100230012	F092957	N/A	MAARRIADTTCDVIYNTLTPEDDGSATVTPVSMTLKASIKPLQPKDIERLQMGGIEVREGVSILISEALDERPERIEADGKKWRVLSWSFIPAYDNESGSPVGTVVAQCDEIRVLPADVE
Ga0209200_10023002	F102391	AGGCGG	MAFQLDGDGNILFDAVTGLAKQVTGLQSLEQDAMSECRCEQGGNFADSSYGRNPLVWKLSQSTADKIADVKRIVSKYYNPFSITYENGIITVD
Ga0209200_10023009	F096520	AGG	MKYIYLIGMMIMAFFRGAFRRSPAARAANAQESLTVVIGQCVATFTAKLTGESISFGGETMYNEEDLLGDITLDTERGKRHMAADGSRGVLILSTPRAGNREVKFLLGENLDRLKSWGQAKIQTIFDFDFYYAYNTQSSEGARIHRHKNCYFTKMPLAGVGRDRGYVTAEISFEDVAEIDPSTDNEI