NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208869_1007306

Scaffold Ga0208869_1007306


Overview

Basic Information
Taxon OID3300025779 Open in IMG/M
Scaffold IDGa0208869_1007306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F053818Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208869_10073061F015181N/AMNQTLLSKEDVMILDLLERVKKKEDTLTEESRKKDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIANYVTEKFFQMKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK
Ga0208869_10073062F015058N/AMDDSWIYTLNSDIMRKDRERLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGSMQFHSLSESGNNPVDLYETEKTIVLMKLEAKLLQLEHLYKSLLEIKPVELKMFQ
Ga0208869_10073063F053818N/AMKEICELLNELDEGKEKFFINRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPIQREAVNLARVLLTGDNESVVSKSRVVTDLLQSIKETIIQMEKVCKGSKATKEVKELAIESIVVLNSTEARLGYLKHLYEKIIEKTSLVIVGT
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