Scaffold Ga0208869_1001202

Overview

Basic Information

• Taxon OID: 3300025779
• Scaffold ID: Ga0208869_1001202
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5293
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014232	Metagenome / Metatranscriptome	264	N
F016925	Metagenome / Metatranscriptome	243	N
F028152	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208869_100120211	F016925	N/A	MKRGVGKAMPTQHIVATNGIIRPVGPTDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLRKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0208869_10012022	F014232	AGG	MSQEKSEINSEVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLINGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQEMLDATSSEESNSEDEICSSNILSLK
Ga0208869_10012023	F028152	N/A	MDNIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRALLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERINFGVTEVRKISPYEYKDPREVNFKIPKVKDETKVVTRVRNPTYLDFLYRPQIN