Scaffold Ga0208869_1001036

Overview

Basic Information

• Taxon OID: 3300025779
• Scaffold ID: Ga0208869_1001036
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5724
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F076862	Metagenome / Metatranscriptome	117	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208869_100103610	F100357	N/A	MDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAVEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0208869_100103611	F045530	GAG	MIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVRMSKTGLIKIYKNKEQIKKVYNTAITEEGTRRHVDEEGPPRKISSGIYTRQKIQLN
Ga0208869_100103612	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDVRHSLNEIGQNSQQGDGDEIFLSANTDVRHSLNEIGQNLQQGDGDEIFLSAN
Ga0208869_10010363	F102512	N/A	MSVKRLIDEALVTYIRREMCDGIVKLCIEMKTFAEILEKFPVERLQLLKTEIIKVHNQIFGMMEEVKESFLQLV
Ga0208869_10010366	F076862	N/A	MSDPSHNSTVEKITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSPRTHTIARQYGRKYPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW