Scaffold Ga0208699_1008807

Overview

Basic Information

• Taxon OID: 3300025776
• Scaffold ID: Ga0208699_1008807
• Source Dataset Name: Marine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1509
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: North Pacific Ocean
• Coordinates
  • Lat. (^o): 14.53
  • Long. (^o): -118.77
  • Depth (m): 294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059074	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208699_10088072	F059074	GAG	MEIDLSLNRSLEELISSYFEAYEAGMGCDSFLGVNTNATAADVSSYYVLENYLSDYGAI