NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208699_1003365

Scaffold Ga0208699_1003365


Overview

Basic Information
Taxon OID3300025776 Open in IMG/M
Scaffold IDGa0208699_1003365 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2758
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)14.53Long. (o)-118.77Alt. (m)Depth (m)294
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003122Metagenome / Metatranscriptome506Y

Sequences

Protein IDFamilyRBSSequence
Ga0208699_10033655F003122GGAGMIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLVLVLVSSTYVTYTSILGYPRVAKPKEGLYLKHYIDEPNWIYLWVVYKERIPISYQLVYSREIHKALEGVKKKSEGEGKFMVLREEVHGEAGEEEGAKNKKEGGITIGGDISFYEWEYESDSQQKNPEGE

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