Scaffold Ga0208427_1185400

Overview

Basic Information

• Taxon OID: 3300025771
• Scaffold ID: Ga0208427_1185400
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 669
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED95 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019631	Metagenome	228	Y
F048235	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208427_11854001	F048235	AGGA	MASLKNKLRKKHFDTQFRMKKKMEKLAAYDLEYAQSYDINEILSGNEAYQEFVSNKNYEYXR
Ga0208427_11854002	F019631	N/A	YLMAALFALIPNVAMSQAMNKVDMITEFSDIATLIAAEILKCGETDKERVLAFNGIFDSFMLYTAEQEGVDLTQEEIEAYKLMILMQQYEGMMVAHSNKGCNSINKIIDMYDDKMHYAESVYDYYQPLDTL