Scaffold Ga0208427_1114382

Overview

Basic Information

• Taxon OID: 3300025771
• Scaffold ID: Ga0208427_1114382
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 920
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F006528	Metagenome / Metatranscriptome	371	Y
F016274	Metagenome	248	Y
F066150	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208427_11143821	F006528	N/A	VKEKIKLSTNIDKEKLAIQTFKNIIEGSRSINGVTWNRIKNLKPKEQIICLKQLSQ
Ga0208427_11143822	F016274	GAGG	MRNKYGLPLVYDFNIDLWDKRRIRNLEYMKWNCPKGWKSLWSNKLDQLKKNISERKNKTL
Ga0208427_11143823	F002318	AGG	MKNKFYSVTKDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKLLEREK
Ga0208427_11143825	F066150	N/A	KILANYELKDMGQPIKETSCWLFFEKGKIAKHTIERLRYDSQIKEFRKLLVFAKYQPINNTIN