Scaffold Ga0208427_1026562

Overview

Basic Information

• Taxon OID: 3300025771
• Scaffold ID: Ga0208427_1026562
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F012662	Metagenome / Metatranscriptome	278	N
F017635	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208427_10265622	F012662	N/A	MKEILLQPSDMIEELMYHIMWNEFDGKLDPDHKYFPLYLSLQQLLEDETRRLEE
Ga0208427_10265623	F017635	N/A	MTSNNLTDQYLDMNDLCDDSLEALIQHYLSLKKRMPNNLSVRERLVELQDEKFNRELKADAESKANNREREASTIEGVIRQNTENPL
Ga0208427_10265624	F008547	AGGAG	MSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRDYPEYQGRAESKECFMEQCKSVMKELNKISQNNRPTCEKIPCDTCGLTSPKMEAQLTCPDCLINDQ