Scaffold Ga0208767_1185194

Overview

Basic Information

• Taxon OID: 3300025769
• Scaffold ID: Ga0208767_1185194
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 716
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F062175	Metagenome	131	N
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208767_11851941	F062175	N/A	MMTDKEAQAFMQKVDSSAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKI
Ga0208767_11851942	F084107	N/A	MNEDLTLQISNAFNDTGAYKELNRLLFVSNTLGKDEVEELVDRLEAFIVQEVNEIIDER
Ga0208767_11851943	F020115	N/A	MNNTMTYEQFEILRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0208767_11851944	F025729	N/A	MDKAIIDRLEYVEETYAGEMETWQDPVTGDYYHVPLTILRDWENSEKL