Scaffold Ga0208767_1037905

Overview

Basic Information

• Taxon OID: 3300025769
• Scaffold ID: Ga0208767_1037905
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F030088	Metagenome	186	Y
F039132	Metagenome	164	Y
F047679	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208767_10379051	F030088	N/A	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKTYVPFSAMSVVFNSKGATKRFDKDLDSLVHPTKGKLFC
Ga0208767_10379052	F047679	N/A	MTNLETSTAPIVADQEGDHYFMVGETVYYLNEFMKTLGNRDFDGVAHITNQGGIGIKIDEANEEVEYTIFTASY
Ga0208767_10379055	F039132	N/A	MSKAVDSVMWQVIEDMNFNERGHDEAGLYLINESGLTLDAMKKVEMFARRKQEKLYRQLFDVTGVSDDSYDDLLWQIVANGEEFYNNITLEKAQSMIDNNEYTESFAYAFHKIDDLIEEDQSLKKREQQLAYIERCRQGVHGSFHKALVDAFDKADNVNKVRLSLGFQEVFGEIV
Ga0208767_10379056	F015092	N/A	MVMIDKIKSKLLTKLFIDWVNQEFDTELLEASKVMIENRQEQVNFLAAKMNPPAPIGFRYQNEN