Scaffold Ga0209137_1078793

Overview

Basic Information

• Taxon OID: 3300025767
• Scaffold ID: Ga0209137_1078793
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F003777	Metagenome / Metatranscriptome	469	Y
F084241	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209137_10787932	F003777	GGAG	MSKIRPSIVTPFNDKQRFKNLVLEVINDTTIYTLIPDSISLNGVLFTLTLLNKKFVFEEIKVDDLSDYIDVYLQGIKRSSDNYSVTDNGSDIIITFTENITLVPVEIVKEDFSVKGKIVS
Ga0209137_10787933	F002188	GGA	MIKDLQKLLKQVHEPDEYQLVPHNMSHPLYWIWKIENGKMKDLDIKLRPFRNEHARFDIFINGQFILEKDYTTKQSGKDFHVKFIKANFAGAYDLEIDDDIKLEGDIDLV
Ga0209137_10787934	F084241	N/A	WGDKSGFKFRVKIDSFDNTTEVGEGSQRIVRTTFTMMVNAYLLPEKFDNELTHKKSFSPKKVVWGMEFDMTGGTGTQSATTQRLYNEYSDIIDFMSIRGSQQSTYVDSQTMKLTNVKLPKLPPELVGTFNVDDWFRVYINGVYIPPTKYTYSYDYQNKEITFIMDTSSPVSSTSLGYILENTDEIGVTGKFIEL