Scaffold Ga0209137_1014587

Overview

Basic Information

• Taxon OID: 3300025767
• Scaffold ID: Ga0209137_1014587
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4877
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013295	Metagenome	272	N
F024204	Metagenome	207	N
F054415	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209137_10145872	F024204	AGGGGG	MKNYSYLEIIEDGIEVCASCGGANINGNRNIDDQDNTKPQDHCFDCDYAEGTALCMPNDLYFYQEAQATLNKIAKGEL
Ga0209137_10145874	F013295	GAG	MKINDLTPKQFARREIIKYLRDLFDNPQKYITNFDSYTHRQQEEILRFISLDEDRINKLLNLPMGES
Ga0209137_10145876	F054415	GAGG	MTEHTNQVEQQRERLKTEALDNQVTALEIRAGRIQTWYESGRVVTEYPRDKRKKTTTDYRGIK