Scaffold Ga0208040_1040936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208040_1040936

Scaffold Ga0208040_1040936

Overview

Basic Information
Taxon OID	3300025762 Open in IMG/M
Scaffold ID	Ga0208040_1040936 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2223
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	39.88	Long. (^o)	-75.22	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045729	Metagenome / Metatranscriptome	152	N
F088844	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208040_10409362	F088844	N/A	MFHVKQSERKSQPQNLQGVHPNNMDAEIERKSAKKNLKNFKMRSMTKFDDYFMKKGRIVSRETIGQNSEFIIYRVIGDNWKIERASKFFNDFNKNVDFREAFLLCNVVIVRLREKNLCPYCVEYFENLTQIYQHLKAWHN
Ga0208040_10409363	F045729	N/A	VQVITNQELNSSLLKFLEGLDYYYPVTKPLFQLLYNKGFRSIEVNDLQRFTIVSETEIRFKPAKNNHYRTFLIEEFPSDFIEAIRKNSPKYLSISCNTMRYTFNNLYKYRKVFSGNKEISLHLFRYNFCRKLYDSGESCEQIGARLGEIDLSNLDSYLFADIYRL

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