NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1097362

Scaffold Ga0208899_1097362


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1097362 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006772Metagenome365Y
F048238Metagenome148Y
F056529Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10973621F048238N/AATKSVHLQYCQIEDENFPLAITRFTSFDLDDKPLSVEQVTYESNIDYMERQIINALRCNVEVSILTTTPIHEFKRLYHIFKSDK
Ga0208899_10973622F006772N/AMERLNKAIQLSTTGDLQRAAMFLEDARKVRQGSRRQRTNARSSQATAWQKKVDDSIAW
Ga0208899_10973623F056529N/AMATKHGNRVYIQVLLEPFRGELFMQEADSQGIKPSALIRQLVYDYLAENTKEETYCEALVNDKQKWQDAVDARLEGRARNRRSKVDQSDATIDASSSPM

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