Scaffold Ga0208899_1068520

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1068520
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1430
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10685203	F049286	AGGAG	MPKYEVTRSYTVTCVARIYANTHAHAEEIALYDGDVHWKEYDGDYDAEITVEEIDDV
Ga0208899_10685206	F002430	AGGAG	MTLKLPKKQVNAILVALDTEIQYQFESGGKPDWEYYPEMAAMMMAYYTTRCKFEEDDCNE
Ga0208899_10685207	F007346	GAGG	MNENEIRGIRLSQALKWSGQDIFEVASAAFEDANYHSFNEVFHAAWTEFQKELEDG
Ga0208899_10685208	F003073	AGGAG	MGKKLENMTQDERIAYWSAQREKERIQRRNRIAKLSLDQRVAVIKVYQLVDEILDTAMYPDLGGIKAVTAYDLQELADAKDR