Scaffold Ga0208899_1045704

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1045704
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038600	Metagenome	165	Y
F057323	Metagenome	136	N
F073484	Metagenome	120	Y
F088798	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10457041	F038600	AGGAG	MSVTIYLTDHNGRKVAFFYRIDSERYNTAPSIIWACRDYPEYQGRAESKECFMEQCKSVM
Ga0208899_10457042	F057323	N/A	MKILVLTIRVHGEEDDIYVFDNREVNVLPTIKEWLKENDEHLDLPDHVTDSESFWEWYRKEDDIDHIFIGTQYKELLSE
Ga0208899_10457043	F073484	N/A	MKIEQPNENCLYVTIGNFTYYFDDSIDGECTVNRWHKDDDDINEPELFQTTEDE
Ga0208899_10457048	F088798	N/A	EILWDLIVNYELATESTLQLVTRLNGYTLETLEDVLYALTGYHSYDQFMENER