NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1036582

Scaffold Ga0208899_1036582


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1036582 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2238
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032868Metagenome / Metatranscriptome179Y
F105235Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10365821F105235AGGAGGMPNKKEKFWTMGMPKGGVGPWVWHVWTKGSKKPVRIVAFDLDHIRCQLEG
Ga0208899_10365827F032868N/ASFYEYEDICHMSGPEFSDGQTLTIQEVDRDGNALQDDDGNFVDDEMIDLGDLEKKGAKIECVAEHNSGSDSCRDKFFVFGQYFNKGGFGTNETIQTGPDGIDFRKMAIRYENADGFKCFNEIEYDGTAYYLEEDSTGKSSSFYVGAGDDV

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