Scaffold Ga0208899_1025620

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1025620
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2857
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum → Candidatus Puniceispirillum marinum IMCC1322 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006530	Metagenome	371	Y
F021866	Metagenome	217	Y
F057326	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10256203	F021866	GAGG	MEYNHLKETQLEHDPILKEDITWDQAVRKVESVINDVCKEFEKDGHPYYSESLLKYWRRVLKG
Ga0208899_10256205	F057326	GAG	MRRFNNFAERTARQEISRICKELQKANKKKEDDTWFEDDPKALKEKDYGRVYHEPTIQPFTGGYSILTDIMDKGGNNHLRYTAKHGSARDGVRYRYKKGEKK
Ga0208899_10256207	F006530	AGGAG	MRLIDSLIKKFEEEAVEFASVGMEQEAKDARRLASKYLEMKYNGHTHSLRMEINEKWQKK