Scaffold Ga0208899_1016887

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1016887
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3776
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016661	Metagenome	245	Y
F065668	Metagenome	127	N
F105152	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_101688710	F016661	GAGG	MNYSAERYLALKQFEREQQRDKIRAVLWNVTIGGLYVMVVIQAMRGFL
Ga0208899_10168873	F105152	GAGG	MGREYCRVDDCPSYDYSDYEDSTGYYTPHDSREVDYDPIEQPEMYKRLKEVKTRLGVKQD
Ga0208899_10168879	F065668	GAGG	MYYTIWVGGVEVTAHLTNREEAYRIASNWRNDGYNDVVVERYKPYEYHS