Scaffold Ga0208899_1014745

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1014745
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4138
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003106	Metagenome / Metatranscriptome	507	N
F008547	Metagenome / Metatranscriptome	331	Y
F017633	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10147451	F003106	GAG	MSKEKEPTRGPTWRMREWGRTAYRNRQAKLRAEGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTQHTTPLFLTFVLDMCPYQIASMALQTLLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPHKKDLLALDDRSKAMKLKQFYDYEEERFTLWDTKCKAGLGAWLLEEIRIETGIWQIGFAVGTQKGHKPERICVPSGEYTDWVKRFDAWKETTRVFKMALPDEPVDWYGLVGGGYSLKHMPPQEFFTGKPLSW
Ga0208899_10147453	F017633	N/A	MNDLDNDHIRALIEHYLSVRDKLPDNLTVRDRLEELQAELINRSSTIEGVIRQNTGNPL
Ga0208899_10147456	F008547	GGAG	MSVTIYLTDHRGKQIAFFYRIDSERYLTAPQLIWACRQHPEYQGTAESKEHFIEQAKDVMRELNRSPKVCDTCGLTSPKMEAQSTCPQCLITDK