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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025759 Open in IMG/M |
| Scaffold ID | Ga0208899_1010466 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5181 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006684 | Metagenome | 367 | Y |
| F009110 | Metagenome | 323 | N |
| F022198 | Metagenome | 215 | N |
| F030097 | Metagenome | 186 | N |
| F044196 | Metagenome | 155 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208899_10104661 | F022198 | AGGA | MKTIQQYRKDHPQLSEEQVHSAYHVTEICYPEFAVSGFTLIAPGKCLAVHENGNIAPLRLKESYGESVY |
| Ga0208899_10104662 | F009110 | AGAAG | MIASAVRYMESIKDKVPPAEEEDIIVKAGTPHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGITNRK |
| Ga0208899_10104663 | F030097 | N/A | MRALDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGESKGEQRKSPFSRTTQEKVKK |
| Ga0208899_10104664 | F044196 | N/A | MEDITDKLENAKILINQMIGSHQGTPEAATRYAIDQLGLPQDVASSLIQYANQVNK |
| Ga0208899_10104665 | F006684 | N/A | MQKIIISYIIASALALGLLNHAVNKAQDNIETLAEVLVHHADTLEDHRGVLLQMIDDLTVPYM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |