Scaffold Ga0208899

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1009520 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208899_1009520 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5508
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5508

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005431	Metagenome / Metatranscriptome	401	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F035491	Metagenome	172	N
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10095201	F004990	N/A	GDPKKPCCVCKKGADLNEKGRRYCADHYALYILGKSMSQIEKVLKKET
Ga0208899_100952010	F035491	GAGG	MNHLRTKPTWELRQIVKALSLPISSFLNTDEDVERLEQAQIVLYERRRKNTQSIKMEVK
Ga0208899_100952013	F013234	N/A	MANIKYNKTIEKTILNRLCNGESIRKICKDPAMVSWATFSQKLKDNEKLQDQYYTCKKIGIEMVIAEAQDKLMESISTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ
Ga0208899_100952014	F005431	AGGA	MMDFDDNEKGYSAVIYIMESSKSVVIHFGGFNDLTECRYFSSHIMDDLGIEQLLNVPRGVTVH
Ga0208899_10095203	F011253	AGG	MNNRKAEIDKIIKDMVKNKSLPYANAVSKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN
Ga0208899_10095204	F004629	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDCYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALQELISLYNKHGYKYISK
Ga0208899_10095207	F089429	GGAG	MKAKDINIYSIFSRTYKKKMFPFMDFGEIGILKKVKTIKQVSNVYQFPIKNYYNQKRRVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208899_1009520

Overview

Ecosystem & Geography

Associated Families

Sequences