Scaffold Ga0208899_1009478

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1009478
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5522
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009001	Metagenome	324	Y
F012863	Metagenome	276	Y
F017633	Metagenome	239	Y
F068603	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10094784	F017633	N/A	MTSNSNNLTDLDFLPMNDLDNDHIRALIHHYLSVREKLPDNLTVRDRLEELQAELINRASTIEGVIRQNTDNPIENQ
Ga0208899_10094785	F009001	AGGAG	MSVTIYLTDHNGRKVAFFYRIDSERYLTAPQLIWACRQHPEYQGTAESKEHFIEQAKSVIKELNKISQKTCSTCEKTLQGMENEGTKCSEHDFQ
Ga0208899_10094787	F068603	N/A	MKLINKLPSSADMIDKETAKLFTPAPLEKFVPFILLGFWIAILCSILFS
Ga0208899_10094789	F012863	N/A	MKNYKEYIDYCQSLAEDINDSYSDEIEVTERIHEIADGCQYVIYYAKAWDLVNMMREYNHELFMQAVEEVQDNGFEFEGDINAHMTWIAFFLIRNGIYSAYQHIESEVVA