Scaffold Ga0208899

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1006453 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208899_1006453 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7008
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (22.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7008

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (22.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F005945	Metagenome	385	Y
F006685	Metagenome	367	N
F009001	Metagenome	324	Y
F071009	Metagenome	122	N
F073484	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10064531	F006685	AGG	MSNEKEPTRGPTWRMREWGRTAYRNRQAKLRAEGESSKTESAKRLLKVMAPRLGKRVDDFMYTFGGNTQHTTPLFLTFVLDMCPYQIASMAMQTVLDNLQFNLPVGRMAYKIGKAFENQARWDKAVEEMHPHKRDLLGLDDRSKAMKLKQFYDYEDERFTLWDSKCKAGLGAWLLEEIRIETGIWEVGFAVGTQKGHKPERICSPSGEYTDWVKRFDAWKETTRVFKMALPDEPLDWYELVGGGYSLKHMPPQEFFTGKPLSWFKEHKRSYEHAFSAVNKLQKVAWQINDVMLSIVRQCFDNKRVVGNIPNFSEIPEQPRYTGGDDHELRAWKLKQKDIKSVN
Ga0208899_100645310	F073484	GAG	MNALERSDMKIEQPTENSLYVTIGNFTYYFDDSIDGEVIVKRWRTDEPRDRFNVKDISPELLQTTENE
Ga0208899_100645316	F002528	GGAGG	MKKKTTPTTKSTQPSKAAIDLDPTLPIIKIVSEEEEMHVKMELEMEDETHDMLVKWGKEIASDEDYINIAIADGLKHLIHRADATH
Ga0208899_100645317	F005945	N/A	MNINDQTDTLQYELAKLVYRFKSEYDLNDYTIAGCLDFCKLSVLTETDDVIFAGEPDNALDMLNTGELTEDTDEEEDNTDDEIYPTF
Ga0208899_10064534	F071009	N/A	MTDNLTDPDFLPMNDLCNDSLRALIHHYLSVRDKLPDNLTLRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ
Ga0208899_10064537	F009001	N/A	MSVTIYLTDHNGRKIAFFYRIDNERYLTCPQLIWACRDYPEYQGTAESKEDFMEQCKSVMKELNRSLPARKKCKECDSDLHLRENEGTTCNEHNFNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208899_1006453

Overview

Ecosystem & Geography

Associated Families

Sequences