Scaffold Ga0208899_1006094

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1006094
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7271
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F077490	Metagenome	117	Y
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_100609411	F002221	GAG	MKTYLDETLETKLKELRIYESETYEKWGSRKRIFKMIGVDFEIKFCRAEQMLRDTLYSGKPKKKMQMVEMMHRAFVALNKSCEESGYIMIQPSSRCFNFDKKTAIVCDTDDEKPVLMKIHKNEPDMMIFSVEELLRCIPKDFMEAKELLSKLDKSVNFKRIDHV
Ga0208899_10060942	F077490	AGGGGG	MKNKIKVTGTINSWGHNSIDSTEVFFNKHIEDCSCGGSYSYSAMLQMEQIKAGNLVDDCATIECDNCYSMLDVDDYDIALEIPNNLTEQFAKEKIWCKSKDYVEMSQGVSTMDWDVQMGGKSFEELAEQELKAQGVL
Ga0208899_10060943	F063662	AGGGGG	MEVIFNIVGGGQICLPKREVRGYYKDFITGDTLVQVGESEHKVRESLTEIAYLMGVVQ
Ga0208899_10060945	F013088	AGGAG	MDELIKKALWIPEELHKDIKIFAIQNSLTIEQATQMLIKLGMVTYEAEKGYDSV
Ga0208899_10060946	F093807	AGAAGG	MTQYKDLVETQRLKLNKEKDEWYIHVNNGAGYTEVKNGDTLTKTFHDTGRQEITIDAN
Ga0208899_10060948	F006845	AGG	MDLSSYLLEEDFEQYCRMAFERIQTACDFLGIINDEDYEGFKERCYTQLETDYINSIDKTIH
Ga0208899_10060949	F038657	GGAG	MSILGGMGNTENKQQIYLGFKTMGQKFFANGETEVDVKYLQLDPETFKSGWGRYTKADGFEYKWDAKFGSVEPKPADDWKRAFSCWVMPHGAEHAYLWQRFTYAESSAFDSILDLFWNDIANNTGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNNIPEWYIDPNAPADDDDGFVSPNEGLADKVAEMVAKTELTDDDIPF