Scaffold Ga0208899_1003525

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1003525
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10060
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006827	Metagenome	364	Y
F018644	Metagenome	234	Y
F055644	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_100352513	F006827	N/A	MSEETINYLVYDNEADAIARADTEGARRGYAYHRVGSGTRYHTYPQVTADSKYALVVDGYELTEDEESAITTSVTFPAPEEV
Ga0208899_10035258	F055644	N/A	MSHEATTRPLPIVEPEYNWEDSITLTDYNYLYVPSIPEWAYSEFDGLLYEGKQYNWKEVDYRLSMEYPLVPEPAFVGLFMGLCLLTITLIKRK
Ga0208899_10035259	F018644	N/A	MEFFKYIYENYKDNMLGIAFAYIGIISIVMMFLPKDNFISKIFKEFASIFTSLFKK