NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1002012

Scaffold Ga0208899_1002012


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1002012 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13973
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011679Metagenome / Metatranscriptome288Y
F011848Metagenome / Metatranscriptome286Y
F026890Metagenome / Metatranscriptome196Y
F097450Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_100201213F026890AGGAGMQYNIYQIQVSDEITDFVNSNEGGHYEAAKKYPLYHAKMETMHARGDSDKIDFKQEYFSHYTKVCEVDGRYCGLSDGDRDYTVTSKNEVFSILNQCYLDEETGEDIVFDNHVSNYVMKTITRKNGEQVTYRDMHSLSVGDIIAEQPQVGYEVMDIDDIIPNTRYFIVESYGFTDITDIIQDIDIAVNRIAEAV
Ga0208899_100201214F011679GGAGGMIKDRNTTVLSKDVQPTESLKRFIERCTGAKMTPVKGNDNAFWISGDKRGDYYEQKYYKIVFGSVTQVSYTPNRTEKSGYGFDIQTVGDLNGWQLMGEYRKMIKEEMANYKEKQLESA
Ga0208899_100201219F097450AGGAGMSIYTQNQSKDKITSVDGFIINTVSCSNNNGEPGVTIQLTSLESMWYNHEENVNHPEGSEYPVNINVPFMKLMRERIANSVLARTGYDIRDFDNVIHASISPGRNPDGSFIDNGFDDHVVRNV
Ga0208899_10020124F011848GAGMSNKTPYEIRLDLVREAKEILQARAKNPEDMPTTEEVLKEAERLNEFVSKRPFNESK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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