Scaffold Ga0208899_1001689

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1001689
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15389
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_100168925	F056150	AGG	VNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEDFIIRLDSENSIKKYVYKLCIFQIISERSRYKTKYYIPSHFSSLEDIETYTNTCFKDEVLKDLINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKKNWSINEFYT
Ga0208899_100168929	F043411	N/A	MIDEKTKRFINEIMKRRLTYNGKRVYIKSLGTKRALVSHYKENDYKMFKVDVKDLADFK
Ga0208899_10016899	F016832	N/A	MSKTINYTTRTFYVPAERMDTLIEFQEKCRANGHKSYSSVMLQLMEDYNKNN