NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1001480

Scaffold Ga0208899_1001480


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1001480 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16583
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F001942Metagenome / Metatranscriptome613Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y
F034894Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_100148012F008595AGGAGMSKEENKMENQEPVVITFNGTEYRASDLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINVEVETEVEEEK
Ga0208899_10014802F034894AGGAMNVTFNLMGGGELNIPARAISGFYKDEFTSDVIVEVNGDEYKVRDSLDEIKYILGIVRXK
Ga0208899_100148023F001582N/AMPLESALDFNAYVDTTTGHGVTATFFEVQQTLWDSLGLVDDLFDIDSGASKNINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLIVDAITTDKGNVLKAETTFLVKTVEPDNTGLVSLVLEEQ
Ga0208899_10014804F008281AGGAGMNLMCNTKHGAIEWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFDYQKSIYKIHKLNKKEKK
Ga0208899_10014808F001942N/AVPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYKHYTCDILAFVFFDGEEKRIMFKANTSSQNYFTFDKKVITESMELDSLKETLDSLSSVPVLNPLI
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