NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208694_1035436

Scaffold Ga0208694_1035436


Overview

Basic Information
Taxon OID3300025737 Open in IMG/M
Scaffold IDGa0208694_1035436 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2482
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080199Metagenome / Metatranscriptome115N
F088950Metagenome / Metatranscriptome109N
F103498Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208694_10354362F088950N/AMDIDGVLKEIAEFIEEKIPELDSKVTTIYPESKRFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRG
Ga0208694_10354363F080199GGAGMKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESMKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL
Ga0208694_10354365F103498GAGGMDSTETCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVTSIKDTMIQGFIALIVAVIGVYVSYLLLNVIGFF
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