NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207997_1016362

Scaffold Ga0207997_1016362


Overview

Basic Information
Taxon OID3300025736 Open in IMG/M
Scaffold IDGa0207997_1016362 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3122
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F075727Metagenome118Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0207997_10163622F007072AGGAGGMRSILQKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNALTDGSVAQNVTDDLNTEIANNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTTRV
Ga0207997_10163624F077915AGGAMTYFVTPTGNDTAGFYELFKFVAVSGTDGLLWPVMLLVIWVVSFMAFKNYSTSRAWTFASFFCSILGIMMAVLDYMAPVWMYLCIILTVIGFVWLKLEAN
Ga0207997_10163625F075727N/AMKLQNKRAWVARDFIIAMLIFSGSIALYVLMVGSIANDYDNPNVIDTDFSEKFDKFAEDTDRAGEMWNATTSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGAQLASFGTFFGIPSTISYVFMTLLFGILTVSIIFIIISSVRSGKEL

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