NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1026387

Scaffold Ga0208784_1026387


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1026387 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1863
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002234Metagenome / Metatranscriptome579Y
F003904Metagenome / Metatranscriptome462Y
F014128Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_10263871F002234N/AKSALKDKYDDELWQMSDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKRFFISALTGIIIFTVVFVVLRLLATVHPAAAGVFSIFNMIGSALLSLVKVLTPNAFNLANFVPAHENDHVKGTLTKMVDVIQELKEKQKESSDRVFPLSEILKRFDKEMDSHEKELIQELLKELKWIK
Ga0208784_10263873F003904N/AMEKFLFLVKKYLWIVAAPVAIITLLSISSLKDIEQAYARFKLGRDITLYLRKSTDMLTYLSIAYTSTSEKKFIDQFNNHLEERKKYFDEIFSNKIITVEEFRMFERGLQISDELATKIEKIAFDKMDSKAFFTPEYLEYKRRIYENDQNFRTLINDSSEKLIKEETKLLNIYLYSLCFIILSLVYLIKHEDKPVAKIKNKTKKRK
Ga0208784_10263874F014128N/AMEYLQKMGIQIGFLFSGLFGAILMATKSEKTDVKSVILSLIGGMSAANFLTPVLVDILNIQNVKHQNGVAFIAGFLGLKLVEIVSEKFLEKVNGKTKKTTRKR
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