Scaffold Ga0208784_1021695

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1021695
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_10216952	F010618	GAG	MSIQELIKKLQEIEAKYPQYSQDTEVVLAIHNNNEFSEEVGIDYIDEVVHKALDTHSGYVCRIVLTGEIYTEE
Ga0208784_10216953	F002406	N/A	MENLRWIRAMADRLRDELSSEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEEDK
Ga0208784_10216955	F002398	AGG	MLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKTKFDFFAYLDTIGIEHTQVGSYYFFNRKPK
Ga0208784_10216956	F009266	AGGA	MTDKERKILDKEIQYLCDYQDRVKAIREYTGIHPHKTFLNEVETIESLYKSVLENRKQCKSTYFSVGTAGWFVVYLRDKKKYKEGEEFSIKIYHTFVWSDNLD