Scaffold Ga0208784_1008380

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1008380
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3574
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F007470	Metagenome / Metatranscriptome	350	Y
F031384	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_10083801	F031384	AGGA	MPNWCFNGLTIEGNPDSVKKLINQMNKPFKQLHDTWNMETGQMEKKHTLYPNPIFAFHNIYNYMDAGVSEE
Ga0208784_10083802	F000450	AGGA	MGDRANFVFVQPSGETIVLYGHWAGSGMLETLAEAVAKAQTRWTDPSYATRIAISQMIGDSWGMETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSHFNQGNKVRGMKNEAIFTMDLREFVEKYSDAKILV
Ga0208784_10083804	F007470	AGGAG	MDYQDGFQDGVKFAREVIINNIRLWAESSDDGQVYDDIADKIEFGEVDYEL
Ga0208784_10083805	F000311	GAGG	MYFELTAPDRLSMEMAYWDAQIMGLDPQAMTPLTFNIGTGSIEKVSRIRDKFNLVESYVSDYEPTGYIRS
Ga0208784_10083806	F000980	N/A	MTSYQKYTWVCTGDCDALIEYTIKDGYGWPAGVMDLTCRCGSNCTLLSVEDATIPYTETKGNEMETTELLVPESYNSNLLVTYKKINGYSNPEYITEKVVDLEWELRNGREASKRNGIYQSKIDTVKDIISEAYADSDDQETLQAIAEALGIELTRDVEFTATVEVRGTFTLNLLEDYDLETEITDALYVDANNGNIVIDDTEVCNVREAY