Scaffold Ga0208784_1003013

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1003013
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6566
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F037722	Metagenome / Metatranscriptome	167	Y
F063620	Metagenome / Metatranscriptome	129	N
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_10030131	F008402	N/A	DYWYTVEDTHIDVGCPGCTISYWELPSGMSTIDKRIQHICMDKEEAFAIADAIYKLFKKN
Ga0208784_100301310	F063620	N/A	MTNSITPKVAYIPLEYHMSVEDFLKIWKDMEMEDEPTQEDYDAFVLETGKSYFYDMRGELELHIRLEDA
Ga0208784_100301316	F077968	GGAG	MTDTWKKWNIYTSIYLFEYCVFSWRNHMWNHLDGFEDDEVIMRGLFWYYLNYGNINTYYK
Ga0208784_10030134	F037722	GAGG	MTKHEIGATIGFYIFVGVLGWALVSFFSLTWAQALTISWMYSKLIDVLQ