Scaffold Ga0208784_1000450

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1000450
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20093
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F048940	Metagenome / Metatranscriptome	147	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_100045010	F015080	GGA	LCQAPGLSSLFPLSTQTMFEQLQFIPHHIPGAIQGKYKFSNGWSISVVSGLYGSGLYGIIPEGTYEVAIYRPNGNMTDDVIGWNTKDEVSAMMKVLCQL
Ga0208784_100045012	F048940	GGA	MTTAQRMERQFFIQFIELINEVQNNKTKLPSQAKTYKKSSWVKQVSNPRQKKDALSQV
Ga0208784_10004503	F082582	N/A	MTVDFSKDVMFGMLRKGATGTQILDILNVIVPEQTELTREQVCEDLGIADCPENDDEIARYMAAV
Ga0208784_10004504	F084145	N/A	MFITCPASFDLIDAEWFDDLYDAKQDALNWSCDLDGEKVIVYEAQEDEDGSYDFKKLCAIYA