Scaffold Ga0208784

Basic Information
Taxon OID	3300025732 Open in IMG/M
Scaffold ID	Ga0208784_1000283 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208784_1000283 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25795
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (35.06%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25795

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (35.06%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010681	Metagenome / Metatranscriptome	300	Y
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F061794	Metagenome / Metatranscriptome	131	Y
F091925	Metagenome / Metatranscriptome	107	Y
F095417	Metagenome / Metatranscriptome	105	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_100028312	F015080	N/A	MFDQLTFVPHLNGIPGAIGARHKFSNGWEISVVSGPAGCGLYGEINKIVGAPDTYEVAIFRPNGNMTDDVSGWNTSQEVSAMMWVVSQF
Ga0208784_100028321	F101038	N/A	MELTKSFPPLDGLVEFSNKKLKEFDYVQFGQNVIQFAATFAAIVVGVVSYVWTALQLWWEDNGEATQVNFIRFVVNVIDFIGAVVTETPKVYRWVKLNGNRLIDSLFFQVAFN
Ga0208784_100028325	F027828	N/A	MKTMLDKVLMVEELLNEKQLNALRDMLFVYKDLQKEVHDYPPEDTLFTQTQREVFEIFDI
Ga0208784_100028330	F091925	N/A	MTHISFTSGQILDIISALEEKENELYDAGDKHLAAYYMQMGAQFQRVYDRLQDVVPEKRVAELVLAH
Ga0208784_100028332	F061794	GGA	MPFTKKFPKSGDTTHIRVPKVYADLVLELMVLLDQKFEIDKGTHLLRKFISNLS
Ga0208784_100028370	F095417	AGG	MKNFIRWFFGPSKKPIVEEIDLYAKISELEQRIVKLEDENIETTNLLYELGNSVNAVDARIDILLNTPKHYENFN
Ga0208784_100028371	F010681	N/A	MKLRLTPKQQLWANVFKCAVERSNLYFADKDLDRHTREHTTVVLALQKGDEFWREIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208784_1000283

Overview

Ecosystem & Geography

Associated Families

Sequences