Scaffold Ga0208784_1000265

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1000265
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26791
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F008358	Metagenome / Metatranscriptome	334	Y
F017818	Metagenome / Metatranscriptome	238	Y
F066719	Metagenome / Metatranscriptome	126	Y
F077968	Metagenome / Metatranscriptome	117	Y
F105033	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_100026515	F017818	AGAAG	MNKDAYYDWIDENDTYPKHSHKWIVGLYNKYEGVEALHRYFGPFETREDAKVFISHYKEEYVKPDFITRSKIFPLCEVV
Ga0208784_100026521	F001881	GGAG	MTERANLFMSFVWDQRNHQGADTEEKLVAAILSLAAEYVRSYTAQDSRIVLDRNDLLELAEEIKSL
Ga0208784_100026527	F105033	GAGG	MSRTFRNTEGMNRCALRHPKTSNERKNLIGLLQDNYVEEYEISGLNHLHHRLSNCPTANYDKVVSAYYEEDYKF
Ga0208784_100026528	F008358	N/A	MSSSYIYLIIFFCIAYLIITDQSVAKGFYMLTQLARVQYEKVKWWVVHNPANPIIRYFMWRRSMRLAKELMEELAEKNKN
Ga0208784_100026529	F066719	AGGAG	MVALFLTTTISCSDALNIIHRITKVVGLTQLQKTEIVQEIRKSIPFCPVIVKKDGK
Ga0208784_10002659	F077968	GAGG	MTDTWKKWNIYTSIHLFEYCVYSWSNLMYPHIHGFEDEERMRELFWYYINYGNTNTYYD