Scaffold Ga0208784_1000155

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1000155
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34537
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F022861	Metagenome / Metatranscriptome	212	Y
F042298	Metagenome / Metatranscriptome	158	Y
F043354	Metagenome / Metatranscriptome	156	Y
F064715	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_100015512	F064715	N/A	MSKPNTKQIKSIADKSETVGNELYDEFQKGKKLETAKVAIAAFRNTLYANSLLIKNEKI
Ga0208784_100015516	F043354	N/A	MKMYKMEKLKQEIRNYQLSAGKNYMQYESDGYSQYQNYLYKRALYGLNALTQEELASMCSKKKQRVINVYKRAQKVLNIFKQQVTNQYSNYIFQTLFPKSPWTDEMLEYT
Ga0208784_10001556	F042298	N/A	MGRMKEIYIQILNENGGIPEDMTIADVLKMRELNIYHWQEYERAQERARLQSNKQENLGETAKDSEGESIRRKENN
Ga0208784_100015562	F002332	GAGG	MAIVNQVQKRVRMPKWDVVKFQILAHCYIKRINLSDSDLNCLTLLSFNEPIELTDFCYDASSEDDPIFKSPQTVRNSINKAEKNSLVIKDTSNKKLIKLNPDLKIQTKGTILLDYKFLGDESKEG
Ga0208784_10001559	F022861	AGTAG	MRAICIDSSNRPSKIPKNEWVVEGEVYTITRIVRMGLQDNKFGVLLKEVQLSSESFPYELYDAERFLPIDLLANALQETKETVKEADLELI