NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1000018

Scaffold Ga0208784_1000018


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1000018 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77926
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (48.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005089Metagenome / Metatranscriptome412Y
F037196Metagenome / Metatranscriptome168Y
F057764Metagenome / Metatranscriptome136Y
F095417Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_1000018102F095417GGAGMFKFIKWFISPSKRPIVCEDVDVYEKLIELQKRIEKLEEENVETTNCIYELGNSVNAVDARIDIILNTPNITEF
Ga0208784_100001835F057764GGAMRKKSRPYWNFWKVVFAGWMIRYPGKMFRIIGVPLGILIVVIYNAVK
Ga0208784_100001849F037196N/AMTMTSQTITLEQFHDLLSDAYAVSVNDTLYFVGYDTDDNPYISDNDGQDYVDLSTVDGDIEVHKNYVFFHVNGEPLQMVFLNIKPLNF
Ga0208784_100001850F005089N/AMNTNDLLDSIKLSEQLALENYQQRNGVVDYRLDGVCNHYFAKYDWNGKRDGEICLTCKVSKTVKGSLRYTFQIDGKRIAYKEIWTKFNSLGAFRI

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