Scaffold Ga0209606

Basic Information
Taxon OID	3300025730 Open in IMG/M
Scaffold ID	Ga0209606_1000055 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209606_1000055 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	187155
Total Scaffold Genes	193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (43.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

187155

Total Scaffold Genes

193 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (43.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.53	Long. (^o)	-90.43	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

41.53

Long. (^o)

-90.43

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044275	Metagenome	154	Y
F045503	Metagenome / Metatranscriptome	152	N
F084004	Metagenome	112	N
F098523	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209606_100005526	F084004	AGGAGG	MERCMRTTVAILVLLAAGGLAARAGNDSLEFVYDCFIARFADGNPAWKTEITLEADLNKPPQPPYRLHYNDSLGYYAYRPKHWSELNDYEQFALRNDPRLPDFIRENADSLRNGQFGVFAGSTNATQTALKPGAGARDQSNNARTGRLEHAPAADATSVDSQNAGVLSQEGENRWGYRFEPGDLLNSKPLRLVEVAP
Ga0209606_100005547	F045503	N/A	VAPYNGDMKVKLPRPAPSNQRVREIQQWLGTYGGSVANAYVVNAGALRELGAERGILEKILWRVPREKPEMPLTGEAMMELLAPKRLMREVRKQLKLDTQEHHAHTKAFEQSRQQLIASKIPADAQNREAVIREVESWFKMVLPEMRNTKAILRATELRLESRRDIHPVLPPLRATTELVEQLNKREPGRVYIDKDGGELLLLKPGEQAILNEKGLRIENGAPAMPAPDMN
Ga0209606_100005548	F098523	N/A	VDLDKLKDALQRAGIAFTERLVPHANPATITLVVQRVGYALSVTPTMYYHGPVVEIRPSGGPRINFHTNKDPSELVAVMDTLVQVRKWAARVQPKWATRQMALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLVQLHQENTPKRSWESFVEDWNCQYSASFGHELALSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKTVKGRGNEEGPPREAVPV
Ga0209606_100005576	F044275	N/A	MADRFPIRYEIGGKITAAVLDRLLRQLLDIQMTREYGGCDDEDSLRKEVARISGTSSLQVCHNDLAPYLTGELDLFLMEHKLPFVKRTDARHEYDGQIEWWHPWMKHLGKWEFTNTEANAIHISLESLKKALEGRKTLRQVVAELEGVAPDPGPVILLSATSKKRGTYRRARFSNNDANKTDALQQTRVYLRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209606_1000055

Overview

Ecosystem & Geography

Associated Families

Sequences