NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207655_1012922

Scaffold Ga0207655_1012922


Overview

Basic Information
Taxon OID3300025728 Open in IMG/M
Scaffold IDGa0207655_1012922 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4833
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0207655_10129223F092677GGAGVLRHKKAAASADATPRQKQLYADSVRAFVEKHPHHGRARDVWQRIQLEFAEDLAAMGRYQDAIRFYRAVAVHDPTNEEAQRGLAEAFERLAVTRQKLLALEKGMSHRQVASILGKPVPGWTASRQRPGVMMEAWYYRMNGGGLAAVYFRNGKVLAAEETSNAPLGRFGS
Ga0207655_10129226F002548N/AMPKSEYESPAEVHSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVECARKAILELFPGLEERYTRAVEPHFMRVLAQRWPEEELRFTNPYETVN

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