Scaffold Ga0209047_1014681

Overview

Basic Information

• Taxon OID: 3300025727
• Scaffold ID: Ga0209047_1014681
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3804
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004439	Metagenome	438	Y
F012921	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209047_10146814	F004439	GAG	MKSFTSYLKEARGSSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQQGRRWTSISDLKETSRWTKFAAVEKDLENMFDSLVKKYLKRGEFQENATVWELWRMAERKVDKKTMSLIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK
Ga0209047_10146816	F012921	AGG	MTDNFDFGFSAVSTDEFKKTQADTEPAPSTGVSSTEFNELKEKIDSISSLIQALGDKEDTSLFDETGETVKATGEKITRVEEKIDKILAMESSQVATALEEQGSSIRAVIDEV